Table_10.xls (5.5 kB)

The running times of the BWA aligner, the BLAST aligner, the BOWTIE aligner and the LRD aligner.

dataset

posted on 2014-08-18, 04:24 authored by Liviu P. Dinu, Radu Tudor Ionescu, Alexandru I. Tomescu

The aligners are compared on the task of aligning short DNA reads of bases long on a reference mtDNA genome of roughly bases. The aligners were evaluated on a computer with Intel Core i GHz processor and GB of RAM memory using a single Core.

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A Rank-Based Sequence Aligner with Applications in Phylogenetic Analysis

PLOS ONE

Keywords

Local Rank Distance unix ms dna LRD aligner art alignment tools

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CC BY 4.0