Table_1.xls (9.5 kB)
TE families enriched for genes up-regulated in response to abiotic stress.
dataset
posted on 2015-01-08, 03:30 authored by Irina Makarevitch, Amanda J. Waters, Patrick T. West, Michelle Stitzer, Candice N. Hirsch, Jeffrey Ross-Ibarra, Nathan M. Springera
Number of expressed genes with a TE insertion within 1 kb from the transcription start site.
bPercent of up-regulated genes relative to all expressed genes with a TE insertion. cFold enrichment values (F.E.) for TE families are calculated relative to up-regulated genes among all expressed genes under the same stress condition. dLog2(stress/control) was calculated from aggregated read counts for corresponding TE families and represent the level of stress-induced up-regulation of the TE from a certain family.
TE families enriched for genes up-regulated in response to abiotic stress.
