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TE families enriched for genes up-regulated in response to abiotic stress.

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posted on 08.01.2015 by Irina Makarevitch, Amanda J. Waters, Patrick T. West, Michelle Stitzer, Candice N. Hirsch, Jeffrey Ross-Ibarra, Nathan M. Springer
a

Number of expressed genes with a TE insertion within 1 kb from the transcription start site.

b

Percent of up-regulated genes relative to all expressed genes with a TE insertion. cFold enrichment values (F.E.) for TE families are calculated relative to up-regulated genes among all expressed genes under the same stress condition. dLog2(stress/control) was calculated from aggregated read counts for corresponding TE families and represent the level of stress-induced up-regulation of the TE from a certain family.

TE families enriched for genes up-regulated in response to abiotic stress.

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