Complete Glycine/Serine synthesis pathways in deep-branching bacteria and archaea.
Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
aGlx = Glyoxylate pathways (rxn 12),
bOx = Oxidative pathway (rxns 9–11),
cRed = Reductive pathway (rxns 1–8),
dRed(-2) = Reductive pathway missing only rxn 2,
eGlyC = Glycine cycle (rxns 5–8),
fFDH = Formate dehydrogenase (rxn 1),
g18 archaeal strains that lack only reaction 5 in the glycine cycle were included. For 7 such sulfulobales and the acidilobale a BLASTp search finds a protein that closely matches to this protein in strains not missing it.