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overlap_graph03.png (7.42 kB)
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README.md (0.38 kB)
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test.svg (2.85 kB)
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pre_assembled_reads.fa (103.69 MB)
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ecoli_k12_MG1655.fasta (4.5 MB)
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diff_quiver_tig0.snps (2.26 kB)
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overlap_graph.gml (470.96 kB)
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Write_An_Assembler.py (39.9 kB)
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pr_pr_bn32.m4 (56.43 MB)
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diff_tig0.snps (780.64 kB)
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Write_An_Assembler.ipynb (332.35 kB)
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Write a Genome Assembler in Python / IPython
Version 2 2013-04-03, 16:49Version 2 2013-04-03, 16:49
Version 1 2013-04-03, 14:54Version 1 2013-04-03, 14:54
dataset
posted on 2013-04-03, 14:54 authored by Jason ChinJason ChinData and examples to demostrate how to use greedy algorithms to assemble a genome.
Please visit
http://nbviewer.ipython.org/url/files.figshare.com/1009027/Write_An_Assembler.ipynb
to read/see the IPython notebook
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