Virtual Genome Walking in Ambystoma mexicanum
VGW scaffold sequences, input cDNAs and related GFF files. Files included:
VGWmerged.fasta The merged VGW scaffolds
Annotated_cDNA.fasta The input cDNA transcripts
vgw.gff The input cDNAs mapped to the scaffolds
alltranscripts.gff All of our transcripts mapped to the scaffolds
500Ns.gff The 500N breaks between contigs
VGWmerged.fasta_RM_out.gff RepeatMasker output
coverage_repeats.gff positions where read coverage exceeds 50
consensi.fa.classified repeat library generated by RepeatScout
