Sphaerothecum_destruens_clean.fasta (18.48 MB)
Transcriptome - Sphaerothecum destruens (rosette agent)
dataset
posted on 2017-09-27, 09:51 authored by Multicellgenome LabMulticellgenome Lab, Guifré TorruellaGuifré TorruellaReads are deposited in NCBI: https://www.ncbi.nlm.nih.gov/sra/SRX737879
Assembly in-home BGI to obtain Unigene (contigs)
Assembly in-home BGI to obtain Unigene (contigs)
- ORF prediction using TransDecoder (Trinity plugin) and PfamScan to obtain coding sequences (CDS files) from transcripts (mRNA)
- Protein translations are included (pep)
- clean.fasta: Assembly cleaned from cross-contamination of other
species multiplexed (Corallochytrium limacisporum India, Ichthyophonus
hoferi and Nutomonas longa) after applying CroCo V0.1.1 (Simion et al. in prep). It may contain bacterial contamination.
Guifré Torruella, Alex de Mendoza, Xavier Grau-Bové, Meritxell Antó, Mark A. Chaplin, Javier del Campo, Laura
Eme, Gregorio Pérez-Cordón, Christopher M. Whipps, Krista M. Nichols,
Richard Paley, Andrew J. Roger, Ariadna Sitjà-Bobadilla, Stuart
Donachie, and Iñaki Ruiz-Trillo. (2015)
Phylogenomics reveals convergent evolution of lifestyles in close relatives of animals and fungi.
Current Biology 25(18):2404-10.
Phylogenomics reveals convergent evolution of lifestyles in close relatives of animals and fungi.
Current Biology 25(18):2404-10.
www.multicellgenome.com