.H5AD

LCA_complete_wRaw_toPublish.h5ad (8.38 GB)

.H5AD

Aorta_FIRM_hvg.h5ad (3.27 MB)

.H5AD

Bladder_FIRM_hvg.h5ad (92.17 MB)

.H5AD

Blood_FIRM_hvg.h5ad (162.6 MB)

.H5AD

Bone_FIRM_hvg.h5ad (219.92 MB)

.H5AD

Bone_marrow_FIRM_hvg.h5ad (320.85 MB)

.H5AD

Brain_FIRM_hvg.h5ad (84.9 MB)

.H5AD

Colon_FIRM_hvg.h5ad (15.06 MB)

.H5AD

Diaphragm_FIRM_hvg.h5ad (6.14 MB)

.H5AD

Eye_retina_FIRM_hvg.h5ad (9.41 MB)

.H5AD

Fat_FIRM_hvg.h5ad (149.99 MB)

.H5AD

Heart_FIRM_hvg.h5ad (13.11 MB)

.H5AD

Hypothalamus_Pituitary_FIRM_hvg.h5ad (23.33 MB)

.H5AD

Kidney_FIRM_hvg.h5ad (180.21 MB)

.H5AD

Limb_muscle_FIRM_hvg.h5ad (46.17 MB)

.H5AD

Liver_FIRM_hvg.h5ad (71.51 MB)

.H5AD

Lung_FIRM_hvg.h5ad (373.21 MB)

.H5AD

Mammary_gland_FIRM_hvg.h5ad (35 MB)

.H5AD

Pancreas_FIRM_hvg.h5ad (106.23 MB)

.H5AD

Skin_FIRM_hvg.h5ad (281.51 MB)

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27 files

scanpy/anndata files for Tabula Microcebus

Version 4 2021-12-14, 15:08

Version 3 2021-12-14, 15:06

Version 2 2021-09-14, 22:46

Version 1 2021-04-26, 02:36

dataset

posted on 2021-12-14, 15:08 authored by Camille EzranCamille Ezran, Angela PiscoAngela Pisco, The Tabula Microcebus Consortium

We provide the cell by gene count data for the Tabula Microcebus mouse lemur scRNAseq cell atlas in Python’s h5ad and Matlab’s mat formats, as well as scripts to export the files to R’s Seurat format. Datasets are organized as described in https://tabula-microcebus.ds.czbiohub.org/. Datasets can also be explored and reannotated interactively using the cellxgene browser on the same web link.

LCA_complete_wRaw_toPublish.h5ad contains the entire atlas integrated using the FIRM algorithm (https://www.biorxiv.org/content/10.1101/2020.06.02.129031v2), while the other h5ad objects are individual tissues.