Table S2, MLST type, dDDH and ANI values with reference genomes
Version 4 2025-04-22, 10:03
Version 3 2025-04-20, 20:06
Version 2 2025-04-20, 18:26
Version 1 2025-04-20, 13:30
dataset
posted on 2025-04-22, 10:03 authored by Su-Hyeon KimSu-Hyeon Kim, Ji Min Han, Gyu-Sung Cho, Franz, Charles M.A.P., Mi-Kyung ParkMi-Kyung ParkTable S2, MLST type, and dDDH and ANI values with reference genomes
Average nucleotide identity (ANI) and dDDH were calculated using the pyani pipeline [12] and the genome-to-genome distance calculator (GGDC, formula 2), respectively. Additionally, Identification of acquired AMR genes, plasmid replicon types, and multilocus sequence types was conducted using the Staramr pipeline (v0.11.0) [12], incorporating ResFinder (database version 06.08.2024), PlasmidFinder (database version 08.08.2024), and MLST (v2.23.0).
