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Supplementary files for transcriptome profiling of induced susceptibility effects on soybean- soybean aphid interaction

dataset
posted on 07.06.2019, 13:08 by Surendra Neupane, Adam J Varenhorst, Madhav NepalMadhav Nepal
This dataset consists of two Excel spreadsheet files in .xlsx format, a Supplementary File and Table S1 in .docx format. The image files are in .tiff format. The data were generated as part of a study which used RNA sequencing to generate transcriptional datasets for transcriptome profiling of induced susceptibility effects on soybean- soybean aphid (Hemiptera: Aphididae) interaction.

The data consists of the following files:
Supplementary file 1: Methodology description

Table S1: Statistics of the transcriptomic data using RNA-seq pipeline used in this study.

Figure S1: A flow chart representing experimental methods.

Figure S2: A flow chart showing the RNA-seq data analysis pipeline.

Figure S3: The hierarchical clustering of top 3,000 variable genes.

Figure S4: The correlation between the samples using the top 75% genes.

Figure S5: Quality metrics of G. max sequencing data. (a) Mean quality scores per position. (b) Per sequence quality scores. (c) GC content distribution. (d) Read length distribution

Data File 21: The transformed transcript abundance counts for all the samples.

Data File 22: The hierarchical clustering of top 3,000 variable genes.





Funding

South Dakota Agricultural Experiment Station (SDAES) USDA-NIFA hatch Project to M. Nepal (SD00H469-13), South Dakota Soybean Research and Promotion Council (SDSRPC-SA1800238).

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