Supplement 2. Mathematical code, written in the program Matlab, for conducting the California MPA case study analysis.

dataset

posted on 2016-08-10, 12:45 authored by Christopher J. Brown, Crow White, Maria Beger, Hedley S. Grantham, Benjamin S. Halpern, Carissa J. Klein, Peter J. Mumby, Vivitskaia J. D. Tulloch, Mary Ruckelshaus, Hugh P. Possingham

File List

Short-term case-study (folder v9 ga NPV fullN fix1)

BinaryTabuMonteCarlo_PointLimit.m (MD5: 069b0975e3970338bc17f079a53b895a)

BinaryTabuMonteCarlo.m (MD5: ab10685d98a5f80af5d52bebb3af36cc)

connect_RedSeaUrchin.mat (MD5: 3dd2aa330869182d45bcc1e7ac4ce1b3)

Fleet_v1.m (MD5: 6245a8898a58c02416f687f4463c2013)

MOPmodel_loop1.m (MD5: dd0ab2893f60679adf5ddbc75994b958)

MOPmodel2.m (MD5: 060cfc23c503344f615618d7fae97f6f)

MPA_EF_v1.m (MD5: afaaa7bd17e462c105a5c4696478dd3c)

OptFsum.m (MD5: 1c52a9cfa4e6f9f6adaa91b8e17331d6)

Patches.mat (MD5: 942ceb31cde9277847f9e61b6fac1a3f)

Payoff_Conservation_EFvalue_STATIC1.m (MD5: 884aff36cbea043067de7b42f1efc64c)

Payoff_Conservation_EFvalue_v1.m (MD5: 8f4304eff81d9ac766bebb45311cbe7a)

STATIC1_v1.m (MD5: baa7296232d57c47d1f3f661b55e8ec6)

tuneAlphaCR.m (MD5: 72fc5bac58ddd4daf48836e9ea8a264b)

tuneRmax.m (MD5: 61e855f083d88cd6c53cba18d8b6f78f)

urchinHab135.mat (MD5: b07077150d5ea4733c80f2ebc65b668a)

wapr.m (MD5: 19b797c30b11aba20b390bb03054b234)

Long-term case-study (folder v9 ga T100)

BinaryTabuMonteCarlo_PointLimit.m (MD5: 069b0975e3970338bc17f079a53b895a)

BinaryTabuMonteCarlo.m (MD5: ab10685d98a5f80af5d52bebb3af36cc)

connect_RedSeaUrchin.mat (MD5: 3dd2aa330869182d45bcc1e7ac4ce1b3)

Fleet_v1.m (MD5: 6245a8898a58c02416f687f4463c2013)

MOPmodel_loop1.m (MD5: 15378bd64be805454b33d3ea4ae848d0)

MOPmodel2.m (MD5: b857cafc564ea35043e0701458d9fd8f)

MPA_EF_v1.m (MD5: afaaa7bd17e462c105a5c4696478dd3c)

OptFsum.m (MD5: 1c52a9cfa4e6f9f6adaa91b8e17331d6)

Patches.mat (MD5: 942ceb31cde9277847f9e61b6fac1a3f)

Payoff_Conservation_EFvalue_STATIC1.m (MD5: 884aff36cbea043067de7b42f1efc64c)

Payoff_Conservation_EFvalue_v1.m (MD5: 8f4304eff81d9ac766bebb45311cbe7a)

STATIC1_v1.m (MD5: 9572ae1a22019a66d93f3d4644d543d1)

tuneAlphaCR.m (MD5: 72fc5bac58ddd4daf48836e9ea8a264b)

tuneRmax.m (MD5: 61e855f083d88cd6c53cba18d8b6f78f)

urchinHab135.mat (MD5: b07077150d5ea4733c80f2ebc65b668a)

wapr.m (MD5: 19b797c30b11aba20b390bb03054b234)

Description

1. Open Matlab
2. Navigate to the appropriate directory
2a. For the short-term case study analysis, navigate into the folder "v9 ga NPV fullN fix1"
2b. For the long-term case study analysis, navigate into the folder "v9 ga T100" (Note: running this code takes ~15 days on a standard desktop computer)
3. Open the file MOPmodel_loop1.m in Matlab and run it
4. When complete, the analysis will produce figures of the results and save the results as "data_save_NPV" (for the short-term analysis) or "data_save_equil" (for the long-term analysis)