Single-cell RNA-seq data from Smart-seq2 sequencing of FACS sorted cells (v2)

dataset

posted on 2018-01-27, 00:58 authored by Tabula Muris Consortium

Gene-count tables for FACS sorted cells sequenced with Smart-Seq2 from 20 organs of 7 mice. Cells are grouped by tissue of origin.

Includes data for 53,760 cells, 44,879 of which passed a QC cutoff of at least 500 genes and 50,000 reads.

Cell annotations using the Cell Ontology [1] controlled vocabulary are in a separate csv.

This differs from v1 by renaming "Brain_Neurons" --> "Brain_Non-microglia" to be consistent with the manuscript.

[1] http://purl.obolibrary.org/obo/cl.owl

Funding