Simulation files of oxDNA simulations of a tetrahedron

Name: Simulation files of oxDNA simulations of a tetrahedron
Published: 2025-03-31T08:26:01+00:00
License: https://creativecommons.org/licenses/by/4.0/
Keywords: DNA Nanotetrahedra

dataset

posted on 2025-03-31, 08:26 authored by erik bensonerik benson

Simulation in oxNA to understand the behavior of a DNA tetrahedra carrying a gapmer as it interacts with a miRNA.

The corner simulation file includes 16 replicate simulation and an ipython notebook for the analysis of the opening and closing of the corner making a toehold available.

The 'ToeholdMediatedStrandDisplacement_simulation' file includes 16 replicate simulation and an ipython notebook for the analysis of the displacement of a digested miRNA product by a new miRNA product via toehold mediated strand displacement.

Simulation files of oxDNA simulations of a tetrahedron

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