Simulated-Metagenome.xlsx (11.15 kB)
Simulated-Metagenome.xlsx
dataset
posted on 2018-10-25, 01:12 authored by Raphael Eisenhofer PhiliponaRaphael Eisenhofer PhiliponaList of microbial genomes used to construct the simulated metagenome used in an upcoming study. Simulated metagenomes were constructed using gargammel:
#empirical ancient DNA distribution:
./gargammel.pl --comp 1,0,0 -n 1500000 --loc 4 --scale 0.3 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/
#100bp fragments:
./gargammel.pl --comp 1,0,0 -n 1500000 --l 100 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/100bp
./gargammel.pl --comp 1,0,0 -n 1500000 --loc 4 --scale 0.3 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/
#100bp fragments:
./gargammel.pl --comp 1,0,0 -n 1500000 --l 100 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/100bp
