Revealing Missing Human Protein Isoforms Based on Ab Initio Prediction, RNA-seq and Proteomics

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dataset

posted on 2015-05-04, 08:14 authored by Zhiqiang HuZhiqiang Hu, Hamish S. Scott, Guangrong Qin, Guangyong Zheng, Xixia Chu, Lu Xie, David L. Adelson, Bergithe E Oftedal, Parvathy Venugopal, Milena Babic, Christopher N Hahn, Bing Zhang, Xiaojing Wang, Nan Li, Chaochun Wei

In this project, we design a methods to detect novel transcripts integrating ab initio prediction on genomic sequences and filtration with various RNA-seq data. 100 splice sites were selected and RT-PCR on 48 human tissues and cell lines (including a blank negative control) were conducted. The product of the same tissue or cell line were mixed and sequenced with Illumina Mi-seq.