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R script to generate nine quadrant plot for integrating transcriptomics and proteomics data

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posted on 2024-08-27, 11:05 authored by Manish KumarManish Kumar, Manisha Aswal, nirpendra Singhnirpendra Singh, Neelja Singhal

It is a single script to generate nine quadrant plot that integrate RNA-seq and LC-MS data and further generate quadrants with the commonly expressed genes/proteins in both datasets. This script can be used for integrating two omics approaches such as transcriptomics and proteomics to find cordiality in the expression of gene and translation of its encoded protein.

Funding

M.A. is supported by CSIR-JRF (09/045/(1637)/2019-EMR-1) N.S. is supported by CSIR Senior Research Associateship (Scientists' Pool Scheme) [Grant Number: 13(9089-A)/2019-Pool]. M.K. is funded by the Indian Council of Medical Research [Grant No: VIR(25)/2019/ECD-1] and [Grant No: ISRM/12(33)/2019] and Faculty Research Programme Grant of Delhi University under Institute of Eminence (Ref. No./IoE/2021/12/FRP).

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    transcriptomics analysis confirmedproteomics analyses revealedintegration architecture

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    CC BY 4.0

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