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R codes for Global CNP Manuscript

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Version 3 2025-05-08, 11:19
Version 2 2025-04-20, 10:34
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posted on 2025-05-08, 11:19 authored by Chunkai LiChunkai Li

We compile data from a global survey including 200 natural ecosystems from five climate zones, covering vegetation types of forests, grasslands, and shrublands to investigate how soil microbiomes (i.e., key functional genes and their affiliated metabolic pathways, as well as gene modules encoding carbohydrates hydrolysis) adapt to resource quantity (i.e., soil elemental stocks and pools including multiple C, N and P forms) and stoichiometry (soil total C:N, N:P and C:P) in terrestrial ecosystems at a global scale. Perennial vascular plant cover and productivity were quantified at each sampling site as a measure of vegetation functional characteristics. Information on the functioning of soil microbiomes was characterized by metagenomic sequencing of the extracted soil DNA.

Funding

Y.Z.F. and C.K.L. were supported by the National Key R&D Program (2024YFD1300800) and the National Natural Science Foundation of China (42177297 and 42407401). S.U. and B.B. were supported by the Taylor Family-Asia Foundation Endowed Chair in Ecology and Conservation Biology. T.G. and T.U.N. were supported by Slovenian Research and Innovation Agency projects J4-3098, J4-4547 and Research group P4-0107. M.B. is supported by a Ramón y Cajal Fellowship from the Spanish Ministry of Science (RYC2021-031797-I). G.Y.Z. acknowledges the supports from Ramón y Cajal grant (RYC2022-035226-I) and AYUDAS DE EXCELENCIA RYC-MAX 2023 project from Spanish National Research Council. S.C.H. was supported, in part, by US National Science Foundation grant EAR-2012878 during the writing of this manuscript. R.R. was supported by the European Union Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie IF-GF Actions (MICROBIOCLIM, GA nr. 101028323). B.K.S. and T.S-S. works are supported by Australian Research Council (DP230101448). M.D-B. and F.B. acknowledges support from the Spanish Ministry of Science and Innovation for the I + D + i project PID2020-115813RA-I00 and PID2020‐114942RB‐I00 funded by MCIN/AEI/10.13039/501100011033. J.A.S. acknowledges the support of the grant RYC2023-044125-I funded by MICIU/AEI/10.13039/501100011033 and by ESF+.

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