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REAP-seq protein and mRNA counts

dataset
posted on 21.01.2020, 04:27 by Gennady GorinGennady Gorin, Valentine SvenssonValentine Svensson, Lior PachterLior Pachter
Protein count data were acquired from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM2685243, file GSM2685243_protein_2_PBMCs_matrix.txt.gz, and processed into csv format.

Aligned bam file was acquired from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM2685238, file mRNA_2_PBMCs_possorted_genome_bam.bam.

velocyto processing:

velocyto run (bam directory)/mRNA_2_PBMCs_possorted_genome_bam.bam(transcriptome directory)/genes/genes.gtf

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