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REAP-seq protein and mRNA counts
Version 2 2020-01-21, 04:27
Version 1 2019-06-21, 21:26
dataset
posted on 2020-01-21, 04:27 authored by Gennady GorinGennady Gorin, Valentine SvenssonValentine Svensson, Lior PachterLior PachterProtein count data were acquired from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM2685243, file GSM2685243_protein_2_PBMCs_matrix.txt.gz, and processed into csv format.
Aligned bam file was acquired from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM2685238, file mRNA_2_PBMCs_possorted_genome_bam.bam.
velocyto processing:
velocyto run (bam directory)/mRNA_2_PBMCs_possorted_genome_bam.bam(transcriptome directory)/genes/genes.gtf
