Proteins and sequences from the MicrobesOnline database

This figshare includes scaffold sequences, genes, and protein sequences from MicrobesOnline, a database of (mostly) bacterial and archaeal genomes. The data is provided as a sqlite3 database (gzipped). The tables included are:

Taxonomy -- 1 row per genome

Scaffold -- scaffolds for each genome

ScaffoldSeq -- sequences for each scaffold. (Sequences for Arabidopsis thaliana chromosomes were omitted due to their length.)

Locus -- genes for each scaffold

Position -- positions of genes on scaffolds

AASeq -- protein sequences

Synonym -- gene names

Description -- gene descriptions

TaxParentChild -- parent-child relationships between taxonomic groups

These are a subset of all the tables in MicrobesOnline. More detailed documentation is available of MicrobesOnline's schema is available at
http://www.microbesonline.org/programmers.html