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rooted-16S-tree.nwk (40.14 kB)

.TREEFILE

bac120-alignment-hmq-trimal.faa.treefile (17.39 kB)

.TREEFILE

bcg110-concatenated-alignment.faa.treefile (17.41 kB)

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epa_result.newick (22.38 kB)

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gtdb-filtered-tree.nwk (17.66 kB)

.TREEFILE

ubcg-alignment-trimal.faa.treefile (17.42 kB)

.TREEFILE

uni56-alignment-trimmed.faa.treefile (17.41 kB)

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7 files

Omnitrophota marker gene trees

dataset

posted on 2022-08-14, 04:15 authored by Cale SeymourCale Seymour, Marike PalmerMarike Palmer, Eric D. Becraft, Ramunas Stepanauskas, Ariel D. Friel, Frederik SchulzFrederik Schulz, Tanja Woyke, Emiley Eloe-Fadrosh, Dengxun Lai, Jian-Yu Jiao, Zheng-Shuang Hua, Lan Liu, Zheng-Han Lian, Wen-Jun Li, Maria Chuvochina, Brianna Finley, Benjamin J. Koch, Duane P. Moser, Bruce A. Hungate, Brian P. Hedlund

Phylogenetic trees associated with Omnitrophota marker genes. All trees are newick format.

rooted-16-tree.nwk : Rooted 16S rRNA gene tree.

bac120-alignment-hmq-trimal.faa.treefile: Bac120 marker alignment of high and medium quality species cluster representatives.

bcg110-alignment-hmq-trimal.faa.treefile: "Bacterial core genome" bcg110 marker alignment of high and medium quality species cluster representatives.

ubcg-alignment-hmq-trimal.faa.treefile: "Up-to-date bacterial core genome" ubcg marker alignment of high and medium quality species cluster representatives.

uni56-alignment-hmq-trimal.faa.treefile: "universal" 56 marker alignment of high and medium quality species cluster representatives.