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Neutral Pyrrole Nitrogen Atom as a π- and Mixed n,π-Donor in Hydrogen Bonding

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posted on 2018-12-21, 00:00 authored by Alexander F. Pozharskii, Valery A. Ozeryanskii, Ekaterina A. Filatova, Olga V. Dyablo, Olga G. Pogosova, Gennady S. Borodkin, Aleksander Filarowski, Dmitriy V. Steglenko
9-Dimethylaminobenzo­[g]­indoles 36 and 1-dimethylamino-8-(pyrrolyl-1)­naphthalene 7 were examined as possible models for establishing the ability of the pyrrole nitrogen atom to participate in [NHN]+ hydrogen bonding as a proton acceptor. Indoles 35 (to a lesser extent 6) form rather stable tetrafluoroborates, with the proton mostly located on the NMe2 group but simultaneously engaged in the formation of a charged intramolecular [NHN]+ hydrogen bond (IHB) with the pyrrole N atom. The theoretically estimated energies of IHB in salts 3H+BF46H+BF4 vary between 7.0–10.7 and 6.2–7.0 kcal mol–1 in vapor and MeCN, respectively. The pyrrole N atom undergoes a perceptible pyramidalization but still remains involved in the 6π-electron aromatic system, suggesting that the hydrogen bonding in salts 3H+BF46H+BF4 represents a previously unknown mixed NH···N­(n,π) interaction. Despite the favorable orientation of the N–H bond and the pyrrole ring in salt 7H+BF4, no signs of NH···N­(n) bonding in it were noticed, and the existing interaction was classified as pure NH···N­(π). The results obtained may be useful in studies of secondary protein structures, especially those α-helix sections which contain tryptophan residues.

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