Metabarcoding-inferred haplotyping

The raw sequence data were deposited into the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRR14631855). The Sanger (GenBank accession numbers also listed in Table 1) and ZOTU sequences, sample metadata, and the scripts for the bioinformatics and statistical analyses performed in this study are available from the Figshare Data Repository.