Idiotope_prediction_dataset.csv (134.5 MB)

Idiotope prediction dataset

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posted on 19.09.2017, 14:31 by Rune Alexander Høglund, Andreas Lossius, Jorunn N. Johansen, Jane Homan, Jūratė Šaltytė Benth, Harlan Robins, Bjarne Bogen, Robert Bremel, Trygve Holmøy
This dataset contains deduced amino acid IGHV sequences from B cells of 11 MS and 6 OIND patients (Johansen et al), collected from blood and CSF. Immunosequencing by Adaptive Biotechnologies using the ImmunoSeq survey level assay. Non-productive sequences were removed. The nucleotide sequences were translated to amino acid sequences using IMGT/High V-Quest (Alamyar et al). IGHV sequences deduced from transcripts comprising more than 0.5% of the reads were designated "highly transcribed".

Funding

The study was supported with a grant from the Norwegian Research Council (FriMedBio) (grant/project number 250864) and Akershus University Hospital internal strategic funds.

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