Human bone marrow mononuclear cells

The gene expression portion of the NeurIPS 2021 challenge 10x multiome dataset (Luecken et al., NeurIPS datasets and benchmarks track 2021), originally obtained from GEO. Contains single-cell gene expression of 69,249 cells for 13,431 genes. The adata.X field contains normalized data and adata.layers['counts'] contains raw expression values.

We computed a latent space using scANVI (Xu et al., MSB 2021), following their tutorial.