170704all.txt (13.14 MB)

Human RNA-seq ratio data before and after hypoxic stress

dataset

posted on 2018-01-23, 06:17 authored by Hidemasa BonoHidemasa Bono

RNA-seq reads were processed using RSEM after the adapter trimming by Trim Galore! (version 0.4.1), which is a wrapper script to automate quality and adapter trimming as well as quality control (https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/). As a reference mapping tool, Bowtie2 (version 2.3.2) was used from RSEM (version1.2.31) following a short tutorial (https://github.com/bli25ucb/RSEM_tutorial).

Funding

The National Bioscience Database Center (NBDC) of the Japan Science and Technology Agency (JST)

History

Usage metrics

Keywords

Human RNA-seq RSEM ratio Hypoxia Bowtie2 Gene Expression (incl. Microarray and other genome-wide approaches)

Licence

CC BY 4.0

Exports

RefWorks

BibTeX

Ref. manager

Endnote

DataCite

NLM