Version 2 2024-12-19, 21:46Version 2 2024-12-19, 21:46
Version 1 2022-08-07, 22:41Version 1 2022-08-07, 22:41
dataset
posted on 2024-12-19, 21:46authored byTomohiko ShimadaTomohiko Shimada, Masafumi Matsui, Mitsuaki Ogata, Ikuo Miura, Mai Tange, Misook Min, Koshiro Eto
<p><br></p>
<p><strong>Supplimentary table 1_Locality names.xlsx</strong>: Locality names, accession numbers for mtDNA analyses, and sample size of morphological analyses. </p>
<p><br>
<strong>Supplimentary table 2_Measurements.xlsx</strong>: Raw data (mm) of morphometric measurements. </p>
<p><br>
<strong>12S16S_alignmentNEXUS.nex</strong>: NEXUS data of alignments of 12S rRNA and 16S rRNA of mtDNA (ambiguous regions eliminated through Gblocks).</p>
<p> <br>
<strong>12S16S_alignmentPHYLIP.phy</strong>: PHYLIP data of alignments of 12S rRNA and 16S rRNA of mtDNA (ambiguous regions eliminated through Gblocks).</p>
<p> <br>
<strong>12S16S_ML_besttree.nwk</strong>: The ML besttree inferred from 12S rRNA and 16S rRNA in mtDNA saved in NEWICK format. </p>
<p><br></p>
<p><strong>12S16S_Bayes_besttree.nex</strong>: The Bayesian besttree inferred from 12S rRNA and 16S rRNA in mtDNA saved in NEWICK format.<br>
<br>
<strong>cytb_alignment.phy</strong>: PHYLIP data of alignments of Cytochrome b of mtDNA </p>
<p><br>
<strong>cytb_ML_besttree.nwk</strong>: The ML besttree inferred from Cytochrome b in mtDNA saved in NEWICK format. <br>
</p>
<p><strong>SNP_ML_besttree.nwk</strong>: The ML besttree inferred from SNPs saved in NEWICK format.</p>
<p><br>
<strong>SNP_alignment.phy</strong>: The PHYLIP data of SNPs examined for re-construction of phylogenetic tree.</p>
<p><br>
<strong>SNP_structure_format</strong>: The STRUCTURE data of SNPs examined for STRUCTURE and PCA analyses.<br>
<br>
<strong>Raw_data_of_MIGseq.zip</strong>: Raw data of SNPs (MIGseq) examined in this study.<br>
<br>
<br>
</p>