Genetic and morphological data of Glandirana in East Asia

Version 2 2024-12-19, 21:46

Version 1 2022-08-07, 22:41

dataset

posted on 2024-12-19, 21:46 authored by Tomohiko ShimadaTomohiko Shimada, Masafumi Matsui, Mitsuaki Ogata, Ikuo Miura, Mai Tange, Misook Min, Koshiro Eto

Supplimentary table 1_Locality names.xlsx: Locality names, accession numbers for mtDNA analyses, and sample size of morphological analyses.

Supplimentary table 2_Measurements.xlsx: Raw data (mm) of morphometric measurements.

12S16S_alignmentNEXUS.nex: NEXUS data of alignments of 12S rRNA and 16S rRNA of mtDNA (ambiguous regions eliminated through Gblocks).

12S16S_alignmentPHYLIP.phy: PHYLIP data of alignments of 12S rRNA and 16S rRNA of mtDNA (ambiguous regions eliminated through Gblocks).

12S16S_ML_besttree.nwk: The ML besttree inferred from 12S rRNA and 16S rRNA in mtDNA saved in NEWICK format.

12S16S_Bayes_besttree.nex: The Bayesian besttree inferred from 12S rRNA and 16S rRNA in mtDNA saved in NEWICK format.

cytb_alignment.phy: PHYLIP data of alignments of Cytochrome b of mtDNA

cytb_ML_besttree.nwk: The ML besttree inferred from Cytochrome b in mtDNA saved in NEWICK format.

SNP_ML_besttree.nwk: The ML besttree inferred from SNPs saved in NEWICK format.

SNP_alignment.phy: The PHYLIP data of SNPs examined for re-construction of phylogenetic tree.

SNP_structure_format: The STRUCTURE data of SNPs examined for STRUCTURE and PCA analyses.

Raw_data_of_MIGseq.zip: Raw data of SNPs (MIGseq) examined in this study.