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Gene expression microarray datasets in NETCDF format from MEM database

dataset
posted on 30.01.2019, 11:49 authored by Elena SugisElena Sugis
The raw .CEL files and annotations were downloaded from ArrayExpress https://www.ebi.ac.uk/arrayexpress/ and stored as a part of the collection in Multi Experiment Matrix http://biit.cs.ut.ee/mem/ .
As a part of MEM data preprocessing pipeline the samples were quantile-normalised and background corrected using just.rma() function from affy R package with default parameters. Preprocessed datasets were converted to ncdf format using ncdf R package.

List of the datasets in this collection:
E-MEXP-2280
E-GEOD-5281
E-GEOD-4757
E-GEOD-29652
E-GEOD-28146
E-GEOD-18309

Funding

European Commission under the Health Cooperation Programme of the 7th Framework Programme (FP7); Grant Agreement N° 305299.

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