Popgen Stats from Hufford et al. 2012 Nat. Gen.
Summary statistics for 10kb windows genome-wide and for genes in the maize v2 filtered gene set. Data are from Hufford et al. 2012:
See details in the paper for criteria for calling SNPs, data used for statistics, etc.
locus: GRM name of gene in the filtered gene set
S: number of Segregating sites
ThetaW: Watterson's estimate of theta (per locus)
ThetaPi: nucleotide diversity (per locus)
ThetaH: Fay and Wu (2000) estimator (per locus)
TajD: Tajima's D
seqbp: # of bp sequenced. this should be used as the denominator to calculate per bp. values of the above statistics.