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Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism

dataset
posted on 28.05.2017, 00:00 by Ryu, Jae Yong, Kim, Hyun Uk, Lee, Sang Yup
  • Eight versions of COBRA-compliant SBML files are available for each Recon 2M.1 and Recon 2M.2 depending on the use of: MNXref versus BiGG IDs; Entrez gene IDs (GPR associations) versus Ensembl transcript IDs versus RefSeq transcript IDs versus UCSC transcript IDs (TPR associations for the last three database IDs).
  • 892 personal GEMs (only T-GEMs) built with Recon 2.2
  • 1,784 personal GEMs (both P-GEMs and T-GEMs) built with Recon 2M.1
  • 892 personal GEMs (only T-GEMs) built with Recon 2M.2

 

Publication

Jae Yong Ryu1, Hyun Uk Kim1 & Sang Yup Lee*. Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism., Proc. Natl. Acad. Sci. U.S.A., 2017, http://www.pnas.org/content/early/2017/10/23/1713050114

 

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