Files for Cluster replicability in single-cell and single-nucleus atlases of the mouse brain

Additional large data files from "Cluster replicability in single-cell and single-nucleus atlases of the mouse brain." Smaller files are in the github repo.

The merged_Zeng_AWS.Oct2023.pretrained_* files are the Metaneighbor pretrained models.

Full paths for files from the data folder:
/whole_mouse_brain/processed/macosko/merged_Zeng_AWS.Oct2023.pretrained_Macosko.csv.gz
/whole_mouse_brain/processed/zeng/merged_Zeng_AWS.Oct2023.pretrained_Zeng.csv.gz
/whole_mouse_brain/processed/barseq/barseq_210630.rds
/whole_mouse_brain/zeng/from_API/ccf_coordinates_MERFISH-C57BL6J-638850.csv.gz

Full paths for files from the results folder:
/MERFISH500/Macosko_predictions/joined_scores.df.full.csv.gz (scripts load expanded file)

/marker_results/markers_on_Macosko.1712974391.csv.gz
/marker_results/markers_on_Zeng.1713323744.csv.gz

/full_run_ZengAWS.1698256033/aurocs_full.asymmetric.csv.gz
/full_run_ZengAWS.1698256033/spatial_per_cell_data.972_pairs.csv.gz
/full_run_ZengAWS.1698256033/spatial_per_cell_data.612_pairs.csv.gz
/full_run_ZengAWS.1698256033/spatial_per_cell_data.2009_pairs.csv.gz
/full_run_ZengAWS.1698256033/aurocs_full.csv.gz