14 files

Fagaceae collection

posted on 29.09.2021, 16:04 by Guido GrimmGuido Grimm
This fileset includes matrices and inferences relating to inferences and discussions about phylogenetic relationships in extant and extinct Fagaceae. See readme.txt in each archive for content and labelling conventions.

Version 1
Data, inferences, and exemplary artwork relevant for testing believes expressed in
Wilf P, Nixon KC, Gandolfo MA, Cúneo RA (2019). Eocene Fagaceae from Patagonia and Gondwanan legacy in Asian rainforests. Science 364, 972
based on a "phylogenetic analysis" of seven morphological traits.
Why we want to map trait evolution on networks, pt. 1 – Introduction; pt. 2 – Topological ambiguity.

Version 2
Morphology folder updated.

Version 3
Added Jiang et al. 2021 revisited.7z—reconstructed (phased) haplotype data produced by Jiang et al. (2021, https://doi.org/10.1111/jse.12695) for 28 nuclear gene regions; de-constructed into the putative original, high-polymorphic (2ISP-rich) sequence data, i.e. one sequence per individual instead of two phased (hypothetical) haplotypes.
A fully resolved, and perfectly misleading, species tree