Evaluating data acquisition and interpretation using diagnostic plots generated by DO-MS

Evaluating data acquisition and interpretation using diagnostic plot generated by DO-MS. (a) Distributions of intensities for precursors quantified in all displayed experiments. (b) The distributions of times for accumulating ions for MS2 scans indicate that most ions were accumulated for maximum time allowed, 300ms. (c) Distributions of times between the apexes of elution peaks and the time when they were sampled for MS2 scans. (d) Number of MS2 scans and peptide spectrum matches (PSMs) at different levels of confidence, with and without DART-ID. These and many other plots are automatically generated by DOMS