Draft genome of the Chinese seabass (Lateolabrax maculatus)

dataset

posted on 2021-07-28, 12:59 authored by Baohua ChenBaohua Chen, Yue Shi, Zhixiong Zhou, Yun Li, Wenzhu Peng, Fei Pu, Peng Xu

Refined chromosome-level genome assembly of spotted sea bass (Lateolabrax maculatus). previous reference genome assembly was completed with high accuracy and contiguity at the scaffold level (GenBank accession: GCA_004028665.1). However, the obsolete software LACHESIS was used in processing the raw Hi-C data and chromosome-level scaffolding, which may have introduced sub-optimal orderings and orientations of scaffolds. We therefore re-assembled the reference genome at the chromosome level to correct potential assembly mistakes using the recently developed software 3D-DNA.

Funding

Guangdong Basic and Applied Basic Research Foundation (No. 2019A1515010731)

Knowledge Innovation Program of Shenzhen City (Fundamental Research, Free Exploration, No.JCYJ20170818142601870)

Fundamental Research Funds for the Central Universities, Xiamen University (No. 20720160110)

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Keywords

Lateolabrax maculatus Chromosome-level genome assembly PacBio SMRT sequencing platform High-throughput chromosome conformation capture (hi-C)Genomics Genetics

Licence

CC BY 4.0