Table 2.xls (5.5 kB)
Download fileDescription of human high-grade serous ovarian cancer (HGSOC) tissue scRNA-seq datasets.
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posted on 24.08.2021, 17:37 authored by Ariel A. Hippen, Matias M. Falco, Lukas M. Weber, Erdogan Pekcan Erkan, Kaiyang Zhang, Jennifer Anne Doherty, Anna Vähärautio, Casey S. Greene, Stephanie C. HicksColumns from left to right include the source, the organism, the location from where the tumors were obtained, and the number of cells prior to QC in each dataset. Huntsman Cancer Institute samples were processed with the 10x Genomics 3’ Gene Expression Library Prep v3 protocol, and University of Helsinki samples were processed with Chromium Single Cell 3’ Gene Expression v2 protocol.
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profile gene expressionoften overly stringentkidney tissue [<performing downstream analysesdiv >< parchived tumor tissuesadaptive probabilistic frameworkdriven qc metricquality ’ cellqc metrics independentlyprobabilistic frameworkdownstream analysesdriven mannerquality controlquality cellscell rnacell includescell datasetstissues associatedsoftware packageremove cellspreserving highmixture modelsmitochondrial functionmitochondrial dnajointly modelsjointly modelhigh resolutiongiven datasetespecially untenableeither arbitrarydifferent typescurrent practicescertain typesbiological context5 %)
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