De novo transcriptome analysis reveals putative genes involved in anthraquinone biosynthesis in Rubia yunnanensis
dataset
posted on 2022-01-02, 07:35 authored by Rongfei ZhangRongfei Zhang, Lingyun ChenLingyun Chen, Ninghua Tan, Shanyong Yi, Yuanyuan MiaoThis website includes the de novo transcriptome of Rubia yunnanensis, annotation and the output of differential gene expresion analyses.
The file 'Rubia_yunnanensis_Trinity.fasta' includes assembled transcrips, which was generated using Trinity based on the six RNA-seq data. The file was used for annotation nand differential gene analyses.
The file 'Rubia_yunnanensis_Trinity.fasta.kegg' includes the transcript annotation, which was generated using BLAST based on Kyoto Encyclopedia of Genes and Genomes (KEGG) (http://www.genome.jp/kegg/).
The file 'Rubia_yunnanensis_SL_R.sigDiff ' includes all the differentiall expressed transcripts estimated using edgeR with FPKM data.
The file 'Rubia_yunnanensis_SL_R.sigDiff.kegg' includes the Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation of DEGs. The file was used for identifying genes involved in anthraquinone biosynthesis.
