Datasets used in The opposed forces of differentiation and admixture across glacial cycles in the butterfly Aglais urticae
Version 3 2023-10-09, 12:51
Version 2 2023-10-09, 12:46
Version 1 2023-06-06, 18:41
dataset
posted on 2023-10-09, 12:51 authored by Valéria MarquesValéria Marques, Joan Carles Hinojosa, Leonardo Dapporto, Gerard Talavera, Constantí Stefanescu, David GutiérrezDavid Gutiérrez, Roger VilaAu_filtered_PCA.vcf - used as input for PCA
Au_STRUCTURE.str - used as input for STRUCTURE analysis
Au_IQTREE.phy - used as input for phylogenetic inference in IQTREE
Au_PhyloNetworks.loci - used as input to create gene trees for subsequent use in PhyloNetworks analysis
Au_filtered_TreeMix.vcf - used as input for TreeMix analysis
Au_TASSEL_western.vcf; Au_TASSEL_eastern.vcf; Au_TASSEL_central.vcf - used as input for genetic diversity analysis in TASSEL
Au_filtered_dadi.vcf - used to produce SFS file for dadi analysis
Au_EuSicily_hybridsim; Au_EuSierra_hybridsim - used to simulate hybrids with HYBRIDLAB
