Data and Models (version 1)
This archive contains the following:
a) Phage Susceptibility - a folder containing the scripts and data for MCMCglmms investigating the role of host phylogeny in the susceptibility of Staphylococcus to a bacteriophage, ISP.
b) Leave One Out Cross Validation - a folder containing the scripts and data for MCMCglmm leave-one-out cross-validation where the ability of the model to predict the susceptibility of an unknown host based on the susceptibility of its neighbours and their phylogenetic relatedness is tested.
The complete phylogeny for the 64 Staphylococcus strains can be found in either folder and is called: Staph_Phylogeny.nwk
Funding
South West Biosciences: A Doctoral Training Programme for Bioscience students at Bristol, Bath, Cardiff, Exeter and Rothamsted Research
Biotechnology and Biological Sciences Research Council
Find out more...Investigating the link between genome reduction and pathogenicity using an emerging zoonotic pathogen.
Wellcome Trust
Find out more...The Genetic Basis of Family Effects and the Evolutionary Limits to Large Body-Size.
Natural Environment Research Council
Find out more...Determining causal links between interaction type and network structure in microbial communities
Natural Environment Research Council
Find out more...Experimental coevolution in microbial communities
Natural Environment Research Council
Find out more...