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Custom fastsimcoal2 models

Version 2 2025-02-25, 17:46
Version 1 2025-02-25, 17:36
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posted on 2025-02-25, 17:46 authored by Gihyun YooGihyun Yoo, Jason T. Weir

Custom fastsimcoal2 models for the Palm Warbler subspcies (Setophaga palmarum) hybrid zone project.

Used in 5A_2POP_fastsimcoal2_Pipeline:

  • MODEL_2POP_GLACIALCYCLES: model of subspecies divergence with gene flow at each interglacial period over the last 800 KYA

Used in 5B_3POP_fastsimcoal2_Pipeline:

  • MODEL_3POP_INTROGRESS: model of gene flow from Setophaga palmarum hypochrysea into a central (Quebec) S. p. palmarum population
  • MODEL_3POP_INTROGRESS_FULL: same model as above, except with gene flow modelled between all populations
  • MODEL_3POP_SWAMP: model of gene flow from S. p. palmarum into a central (Quebec) S. p. hypochrysea population
  • MODEL_3POP_SWAMP_FULL: same model as above, except with gene flow modelled between all populations


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