Cucurbita_argyrosperma_subsp_argyrosperma.tar.gz (138.57 MB)
Cucurbita argyrosperma subsp. argyrosperma genome assembly
dataset
posted on 2019-02-15, 22:01 authored by Josué Barrera-RedondoJosué Barrera-Redondo, Enrique Ibarra-Laclette, Luis E. Eguiarte, Daniel Piñero, Rafael Lira-SaadeCucurbita argyrosperma ssp. argyrosperma genome assembly.
Compressed file that includes:
- Genome assembly of the organelles and the nucleus (FASTA format).
- Gene model predictions of the protein-coding genes, lincRNAs and tRNAs (GFF3 format).
- Proteins, transcripts and CDS of the predicted gene models (FASTA format).
- Functional annotation of the protein-coding genes using InterProScan and BLASTp against Swiss-Prot.
- RNAseq information, including the SRA accesions, the raw read counts and the FPKM count per gene.
