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BioSR: a biological image dataset for super-resolution microscopy

Version 9 2024-01-02, 07:36
Version 8 2022-10-04, 13:46
Version 7 2022-04-02, 10:03
Version 6 2021-01-05, 03:02
Version 5 2020-12-08, 08:11
Version 4 2020-12-07, 14:03
Version 3 2020-12-07, 13:37
Version 2 2020-11-24, 02:32
Version 1 2020-11-23, 13:06
dataset
posted on 2024-01-02, 07:36 authored by Chang QiaoChang Qiao, Di Li

BioSR is a biological image dataset for super-resolution microscopy, currently including more than 2200 pairs of low-and-high resolution images covering four biology structures (CCPs, ER, MTs, F-actin), nine signal levels (15-600 average photon count), and two upscaling-factors (linear SIM and non-linear SIM). BioSR is now freely available, aiming to provide a high-quality dataset for the community of single bio-image super-resolution algorithm and advanced SIM reconstruction algorithm developers. For more information about BioSR, please see our Nature Methods manuscript, "Evaluation and development of deep neural networks for image super-resolution in optical microscopy" (DOI: 10.1038/s41592-020-01048-5).

Update 2022.10.04

Add DataSet of rDL-SRM (Zenodo Link).xlsx file, which includes descriptions and Zenodo links of BioSR+ (data extension of BioSR) and other data used in our Nature Biotechnology paper "Rationalized deep learning super-resolution microscopy for sustained live imaging of rapid subcellular processes" (DOI: 10.1038/s41587-022-01471-3 ).

Funding

National Natural Science Foundation of China (NSFC; 91754202, 31827802, 31800717)

Ministry of Science and Technology (MOST; 2017YFA0505301, 2016YFA0500203)

Chinese Academy of Sciences (CAS; XDB19040101, ZDBS-LY-SM004)

China Postdoctoral Science Foundation (BX20190355)

History