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DATASET
spline_fits.csv (994.39 kB)
DATASET
bootstrapped-emergent-interactions.csv (772.64 kB)
DATASET
bootstrapped-net-interactions.csv (771.33 kB)
DATASET
tidy-data.csv (83.19 MB)
.CONSTRAINED_OUTPUT
RAxML_result.constrained_output (0.79 kB)
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Bacterial isolate chemical responses data

dataset
posted on 2024-01-24, 15:14 authored by Tom SmithTom Smith

Dataset of growth responses of bacterial isolates to mixtures of chemical stressors. Data present:

  • tidy-data.csv - raw growth curves, OD600 readings recorded at hourly time intervals.
  • spline_fits.csv - results of fitting spline curves to the growth curve data and calculating the area under the curve (AUC) as an overall metric of growth for each bacteria-stressor combination.
  • bootstrapped-emergent-interactions.csv - results of significance testing for emergent interactions using bootstrapping methodology.
  • bootstrapped-net-interactions.csv - results of significance testing for net interactions using bootstrapping methodology.
  • RAxML_result.constrained_output - phylogeny of bacterial isolates in newick format with branch lengths.

Funding

A Novel Framework for Predicting Emerging Chemical Stressor Impacts in Complex Ecosystems

Natural Environment Research Council

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