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BE1 10XGenomics count matrices

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posted on 2023-09-11, 13:00 authored by Raffaele CalogeroRaffaele Calogero, Federica Riccardo, Maddalena Arigoni, Maria Luisa Ratto, Luca Alessandri

BE1 is a benchmark dataset for single cell RNAseq (10XGenomics platform) providing a controlled heterogeneity environment using lung cancer cell lines characterised by expressing seven different driver genes (EGFR, ALK, MET, ERBB2, KRAS, BRAF, ROS1).

Fastq files will be soon available on GEO database.

This dataset contains for each cell line:

  • QC of the 10XGenomics runs (metrics_summary.csv, web_summary.html).
  • The sparse matrices generated for each experiment by cellranger software.

Funding

Research Program CN00000013 “National Centre for HPC, Big Data and Quantum Computing"

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    Keywords

    single cell RNA profilingoncologybenchmark experimentEGFRALKMETERBB2KRASBRAFROS1Cancer driver gene

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    CC BY 4.0

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