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Atollgen pipeline outputs

Version 2 2023-06-16, 20:06
Version 1 2022-11-12, 09:56
dataset
posted on 2023-06-16, 20:06 authored by Nicolas CellierNicolas Cellier, Audrey BioteauAudrey Bioteau, Vincent BurrusVincent Burrus

This dataset contains the AtollGen pipeline results, including :

- README.md : an extended description of the figshare dataset

- annotation_results : a collection of all the analysed GIs with their annotations as json files. 

- base / base_with_overlaps : summarises all output information in 1 row per island in tabular form (as a collection of csv files in zip archive) 

- grouped / grouped_with_overlaps : aggregates base information in tabular form (as a collection of csv files in zip archive). Aggregation groups include among others : GI classification (by_label), host genome taxonomy (by_phylum), GI genomic environment (integ_site)

- all_islands_with_overlaps_data : all GIs basic information including overlap information in 1 row per island in tabular form 

Funding

Natural Sciences and Engineering Research Council of Canada (NSERC)

Natural Sciences and Engineering Research Council

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Canadian Institutes of Health Research (CIHR)

FRQNT Excellence Award

Fonds de Recherche du Québec – Nature et Technologies

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Fonds de recherche du Québec - Santé (FRQS)

History