Antimicrobial resistance surveillance report, Yasothon Hospital, Yasothon, Thailand, 01 Jan 2023 to 31 Dec 2023

The AMASS Version 3.0 (BETA) Build 3026 that was released on 8 January 2024 provide updates including:

1. Add “Annex C: Cluster signals”. This supplementary report shows the information of potential clusters which are identified using the SatScan (www.satscan.org);
2. Add processed data files in the folder “Report_with_patient_identifiers” so that users can use the processed data files (e.g. deduplicated and merged data files for each AMR pathogen) for any further analysis and internal use;
3. Enterococcus faecalis and E. faecium are explicitly included in the pathogens under the survey (while Enterococcus spp. are used in the AMASS version 2.0);
4. Add a few antibiotics in the list of antibiotics for a few pathogens under the survey;
5. Use only Python rather than R + Python (as used in the AMASS version 2.0)

The application can be downloaded from https://www.amass.website

This is a repository of the files for Yasothon Hospital.The attached four files are:

1) The AMR surveillance report automatically generated from AMASS Version 3.0 (BETA) Build 3026 using hospital admission and microbiology data of Yasothon Hospital in Thailand

2) Data dictionary for microbiology data file of Yasothon Hospital (configured by the hospital to be used with the exported dataset from WHONET version 2022 and the AMASS Version 3.0 (BETA) Build 3026 application)

3) Data dictionary for hospital admission data of Yasothon Hospital (configured by the hospital to be used with the exported dataset from HOSxP and AMASS Version 3.0 (BETA) Build 3026 application)

4) Data dictionary for wards from microbiology data file of Yasothon Hospital (configured by the hospital to be used with the AMASS Version 3.0 (BETA) Build 3026 application)

Please note that the three data dictionary files can be re-used with the data files of the hospital in the future in cases when variables names and values in the raw data remained unchanged.