deblur_125nt_no_blooms.biom (23.92 MB)
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American Gut Project fecal sOTU counts table

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posted on 12.04.2018, 19:09 by Daniel McDonaldDaniel McDonald, Daniel McDonald, Adam Robbins-Pianka, Allison E. Mann, Alison Vrbanac, Amnon Amir, Angel Frazier, Antonio Gonzalez, Anupriya Tripathi, Ashkaan K. Fahimipour, Caitriona Brennen, Cameron Martino, Carlito Lebrilla, Catherine Lozupone, Cecil M. Lewis Jr., Charles Raison, Chi Zhang, Christian L. Lauber, Christina Warinner, Christopher A. Lowry, Chris Callewaert, Cinnamon Bloss, Curtis Huttenhower, Dan Knights, Dana Willner, Daniela Domingos Galzerani, David J. Gonzalez, David A. Mills, Deepak Chopra, Dirk Gevers, Donna Berg-Lyons, Dorothy D. Sears, Doug Wendel, Elaine Wolfe, Elijah Lovelace, Embriette R. Hyde, Emily Pierce, Emily TerAvest, Emmanuel Montassier, Evan Bolyen, Frederic D. Bushman, Gail Ackermann, Gary D. Wu, George M. Church, Gholamali Rahnavard, Gordon Saxe, Grant Gogul, Gregory Humphrey, Hannah D. Holscher, Ivo Ugrina, J. Bruce German, J. Gregory Caporaso, Jack Gilbert, Jacob M. Wozniak, Jacqueline Kerr, Jacques Ravel, James Gaffney, James D. Lewis, James T. Morton, Jan S. Suchodolski, Janet K. Jansson, Jarrad T. Hampton-Marcell, Jason Bobe, Jeff Leach, Jeroen Raes, Jessica L. Green, Jessica L. Metcalf, John H. Chase, Jonathan A. Eisen, Jonathan Monk, Jose A. Navas-Molina, Jose C. Clemente, Joseph Petrosino, Joshua Ladau, Joshua Shorenstein, Julia Goodrich, Julia Gauglitz, Julian Jacobs, Justine W. Debelius, Karsten Zengler, Katherine S. Pollard, Kelly S. Swanson, Kim Lewis, Kris Mayer, Kyle Bittinger, Lindsay DeRight Goldasich, Lindsay Dillon, Livia S. Zaramela, Luke R. Thompson, Lynn M. Schriml, Maria G. Dominguez-Bello, Marta M. Jankowska, Martin Blaser, Matthew A. Jackson, Meg Pirrung, Michael Minson, Mike Kurisu, Nadim Ajami, Naseer Sangwan, Neil R. Gottel, Nicholas Chia, Noah Fierer, Owen White, Patrice D. Cani, Paul Wischmeyer, Pawel Gajer, Philip Strandwitz, Phillip Hugenholtz, Pieter C Dorrestein, Purna Kashyap, Rachel Dutton, Rachel S. Park, Ramnik J. Xavier, Rob Knight, Robert R. Dunn, Robert H. Mills, Rosa Krajmalnik-Brown, Ruth Ley, Sarah M. Owens, Scott T. Kelley, Scott Klemmer, Sébastien Matamoros, Shyamal Peddada, Siavash Mirarab, Stefan Janssen, Stephanie Moorman, Susan Holmes, Tara Schwartz, Tifani W. Eshoo-Anton, Tim Vigers, Timothy Spector, Tomasz Kosciolek, Varykina G. Thackray, Vineet Pandey, Will Van Treuren, Xin Fang, Yingfeng Chen, Yoshiki Vázquez-Baeza, Zhenjiang Zech Xu, Alexander A. Aksenov, Alexey V. Melnik, Alan Jarmusch, Justin Geier, Pavel Pevzner, Dmitry Meleshko, Bahar Behsaz, Nicolai Reeve, Ricardo Silva, Qiyun Zhu, Evguenia Kopylova, Clarisse Marotz, Larry Smarr, Tanya Nguyen, Hosein Mohimani, Lingjing Jiang, Austin Swafford, Dominic Nguyen, Se Jin Song, Karenina Sanders, Rodolfo Antonio Salido Benitez, Arthur Cole Heale, Dilip V. Jeste, Tanya T. Nguyen, Brennan, Caitriona, Max Abramson
The Deblur sOTU counts table for the fecal samples used in the American Gut Project manuscript. The samples were trimmed to a common read length of 125nt, and processed by Deblur (Amir et al mSystems 2017). Blooms were removed (Amir et al mSystems 2017) and any sample with fewer than 1250 sequences was omitted. This table is not rarefied,.

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