all.hde-elements.stateblocks.txt (1.75 MB)

All HMM states (including those <100nt long)

Download (1.75 MB)
dataset
posted on 05.09.2019 by Daniel Jeffares
All HMM states (including those <100nt long).

As described in:
Fitness Landscape of the Fission Yeast Genome. Molecular Biology and Evolution doi:10.1093/molbev/msz113.



All HMM state blocks are from log phase data.
These are described as HMM defined elements in the article (HDEs)

Data columns are
chr, start, end: genome corrdinates
name: artibitrary name containing chr.start.end.state, eg: I.86889.87840.S2
counts: total insertions in this HDE
min,max,mean,median: informtion about insertion counts in the HDEs (eg: the mean insertion count for all sites in this HDE)
sitespernt: total unique insertion sites/nt of HDEs length
state: HMM state(1-5)


History

Licence

Exports

Licence

Exports