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Affinity-purification mass spectrometry (AP-MS) results processed using SAINTexpress for IPs of TGME49_306650, IMC17 and IMC19 baits.

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posted on 2024-06-20, 18:00 authored by Lakshmipuram S. Swapna, Grant C. Stevens, Aline Sardinha-Silva, Lucas Zhongming Hu, Verena Brand, Daniel D. Fusca, Cuihong Wan, Xuejian Xiong, Jon P. Boyle, Michael E. Grigg, Andrew Emili, John Parkinson

The ‘Bait’, ‘Prey’ and ‘Prey Gene’ columns indicate the bait, identified prey and the identified prey’s gene name, respectively. The ‘ToxoNet HC’ and ‘ToxoNet LC’ columns indicate whether the prey is a predicted interactor of the bait in the ToxoNet high confidence and low confidence networks, respectively. The ‘ToxoNet Cluster’ column indicates the ToxoNet cluster that contains both the prey identified by AP-MS and the bait. The ‘Spectral Counts’, ‘Number Replicates’, ‘Control Spectral Counts’ and ‘BFDR’ columns indicate the number of spectral counts for each prey identified in the bait eluent, the number of biological replicates for the bait, the number of spectral counts for each prey identified in the negative control eluent and the Bayesian false discovery rate, as determined by SAINTexpress, respectively.

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