figshare
Browse
- No file added yet -

Additional file 2: of High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

Download (9.48 kB)
dataset
posted on 2017-05-30, 05:00 authored by Arpita Konar, Olivia Choudhury, Rebecca Bullis, Lauren Fiedler, Jacqueline Kruser, Melissa Stephens, Oliver Gailing, Scott Schlarbaum, Mark Coggeshall, Margaret Staton, John Carlson, Scott Emrich, Jeanne Romero-Severson
Performance of SNP variant callers with two methods of de novo reference construction. Tabular data shows how the number of SNP markers generated by SAMtools and HaplotypeCaller changed after elimination of the SNPs with 30% or more missing genotypes for each of the three marker categories possible with SNPs and informative for mapping in F1 of outcrossing parents. (XLSX 9 kb)

Funding

National Science Foundation

History

Usage metrics

    BMC Genomics

    Categories

    Keywords

    Quercus rubraSequencing depthddRADseqDense linkage mapping

    Licence

    CC BY + CC0

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC