Transcriptome - Abeoforma whisleri

2017-09-27T09:21:33Z (GMT) by Multicellgenome Lab Guifré Torruella
- Assembly in-home BGI to obtain Unigene (contigs)
- ORF prediction using TransDecoder (Trinity plugin) and PfamScan to obtain coding sequences (CDS files) from transcripts (mRNA)
- Protein translations are included (pep)

- clean.fasta: Assembly cleaned from cross-contamination of other species multiplexed (Corallochytrium limacisporum India, Ichthyophonus hoferi and Sphaerothecum destruens) after applying CroCo V0.1.1 (Simion et al. in prep).

Guifré Torruella, Alex de Mendoza, Xavier Grau-Bové, Meritxell Antó, Mark A. Chaplin, Javier del Campo, Laura Eme, Gregorio Pérez-Cordón, Christopher M. Whipps, Krista M. Nichols, Richard Paley, Andrew J. Roger, Ariadna Sitjà-Bobadilla, Stuart Donachie, and Iñaki Ruiz-Trillo. (2015) Phylogenomics reveals convergent evolution of lifestyles in close relatives of animals and fungi. Current Biology 25(18):2404-10.