ANI, AAI and dDDH analysis of A. apicola vs other Arsenophonus strains

dataset

posted on 2022-05-16, 11:07 authored by Greg HurstGreg Hurst, Pol Nadal-Jimenez, Stefanos SioziosStefanos Siozios, Jay D. Evans, James B. Burritt, Georgia DrewGeorgia Drew, David HawthorneDavid Hawthorne, Crystal L. Frost, Ewa Chrostek

Average Nucleotide Identity (ANI), Average Amino acid identity (AAI) and Digital DNA-DNA Hybridization (dDDH) data for Arsenophonus apicola compared to other sequenced strains within the clade Arsenophonus, and with Providencia stuartii and Proteus mirabilis as outgroup genera.

Sheet 1: Pairwise ANI between strains.

Sheet 2: Pairwise AAI between strains.

Sheet 3: dDDH of A. apicola vs other strains using three calculation methods.

ANI and AAI Calculations were made using the enveomics toolkit (Rodriguez-R LM, Konstantinidis KT. The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes. PeerJ Preprints. 2016;4:e1900v1.).

dDDH calculations were completed using the Genome-to-Genome Distance Calculator GGDC 3.0 from dsmz (https://www.dsmz.de/services/online-tools/genome-to-genome-distance-calculator-ggdc).

Funding

BBSRC BB/S017534/1

European Union’s Horizon 2020 research and innovation program under Marie Skłodowska-Curie grant agreements 704382

Microbiology Society Harry Smith Studentship

History

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Keywords

symbiosis Apiculture microbiology Honey bee Microbiology Microbial Genetics Microbial Ecology

Licence

CC BY 4.0