739_sc_counts.csv

dataset

posted on 2021-09-23, 12:49 authored by Ying YaoYing Yao

The data set "739_sc_counts.csv" contains full-quantile normalised gene expression data of selected 739 CD4+ T cells from blood sample of 4 Celiac disease patients. CD4+ T cells were sorted by HLA-DQ-gluten tetramers carrying four immunodominant gluten epitopes, denoted as "Tet+T" in column "specificity" in meta data (739_sc_metadata.csv). All single cell libraries were constructed following SmartSeq2 and sequenced on Illumina NextSeq 500.

Funding

This work is funded by Research Council of Norway https://www.forskningsradet.no (project 179573/V40 through the Centre of Excellence funding scheme and project 233885), and grants from the Stiftelsen Kristian Gerhard Jebsen (SKGJ-MED-017). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Keywords

T cell single cell transcriptome Celiac Disease Immunology

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CC BY 4.0

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